In certain circumstances, the check numbers on the Payroll Check Run Summary report or the Direct Deposit Stub Summary report may not match the numbers on your preprinted checks. This happens if all of the following are true:
Solution: If you use pre-printed checks and want the numbers to match those on the summary report, in the Payroll Check Run window on the Payroll menu, choose Renumber Checks and Direct Deposit Stubs. This will renumber both the paycheck and direct deposit stub numbers for the employees selected in the Payroll Check Run.